Reference transcriptome assembly and annotation for perennial ryegrass
نویسندگان
چکیده
منابع مشابه
De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy
BACKGROUND Perennial ryegrass is a highly heterozygous outbreeding grass species used for turf and forage production. Heterozygosity can affect de-Bruijn graph assembly making de novo transcriptome assembly of species such as perennial ryegrass challenging. Creating a reference transcriptome from a homozygous perennial ryegrass genotype can circumvent the challenge of heterozygosity. The goals ...
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Perennial ryegrass is one of the most commonly cultivated forage species in Europe, where grazing and mowing (cutting) are used to manage this resource. Cutting can be characterized by its intensity (height) and its frequency. Combinations of these two factors affect mono-species grasslands productivity and could also modify the genotypic composition of heterogeneous populations. Indeed, the hi...
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Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
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ژورنال
عنوان ژورنال: Genome
سال: 2017
ISSN: 0831-2796,1480-3321
DOI: 10.1139/gen-2017-0077